Marco Antonio Peixoto

Marco Antonio Peixoto

Quantitative Genetics | Breeding Modeling | Predictive Breeding | Mixed Models

Publications

Submitted

  1. Graciano, R., Peixoto, Marco Antonio, Leach, K., Gustin, J., Settles, M., Armstrong, P., Resende, M. (2024). Integrating Phenomic Selection Using Single-Kernel Near-Infrared Spectroscopy and Genomic Selection for Corn Breeding Improvement. pdf

2024

  1. Peixoto, Marco Antonio, Amadeu, R, Ferrao, F., Munoz, P., Bhering, L., Resende, M. (2024). SimpleMating: R-package for Prediction and Optimization of Breeding Crosses Using Genomic Selection. The Plant Genome. pdf package

  2. Peixoto, Marco Antonio, Coelho, I., Leach, K., Lubberstedt, T., Bhering, L., Resende, M. (2024). Use of simulation to optimize a sweet corn breeding program: implementing genomic selection and doubled haploid technology. G3: Genes, Genome, Genetics. pdf codes

  3. Peixoto, Marco Antonio, Leach, K., Jarquin, D., Flannery, P., Zystro, J., Tracy, W., Bhering, L., Resende, M. Utilizing genomic prediction to boost hybrid performance in a sweet corn breeding program. Frontiers in Plant Science. pdf codes

  4. Leichtweis, B., Silva, L., Peixoto, Marco Antonio, Peternelli, L., Silva, F. Envirotype approach for soybean genotype selection through the integration of georeferenced climate and genetic data using artificial neural networks. Euphytica. pdf

  5. Souza, K., Melo, S., Peixoto, Marco Antônio, Travenzoli, N., Feio, R., Dergam, J. Repetitive DNA mapping in five genera of tree frogs (Amphibia: Anura) from the Atlantic Forest: new highlights on genomic organization in Hylidae. Cytogenetic and genome Research. pdf

  6. Elizeu A., Peixoto, Marco Antônio, Evangelista J., Chaves S., Nascimento E., Benites, F., Teodoro, P., Dias, K., Bhering, L. Applications of linear mixed models in Cynodon spp. breeding. CBAB. pdf.

2023

  1. Peixoto, Marco Antônio, Ferreira I., Leach K., Bhering K., Resende Jr., M. Simulation-based decision-making and implementation of tools in hybrid crop breeding pipelines. Crop Science. pdf

  2. Malikouski R., Peixoto, Marco Antônio, Ferreira, F., Morais, A., Alves, R., Zucoloto, M., Bhering, L. Genotypic diversity and genetic parameters of ‘tahiti’ acid lime using different rootstocks. Pesquisa Agropecuária Brasileira, 58. pdf

  3. Santana A., Marçal T., Salvador F., Souza M., Silva L., Silva B., Peixoto, Marco Antônio, Carneiro P., Carneiro J. Analysis of advanced generation multistage field trials data in autogamous plant breeding: An evaluation in common Bean. Crop Science, 2023. pdf

  4. Evangelista J., Peixoto, Marco Antônio, Coelho I., Ferreira F., Marçal T., Alves R., Chaves S., Rodrigues E., Laviola B., Resende M., Dias K., Bhering L. Modeling covariance structures and optimizing Jatropha curcas breeding. Tree Genetics & Genomes. 2023 Apr;19(2):21. pdf

2022

  1. Santos, I., Peixoto, Marco Antônio, Cruz, C., Ferreira, R., Nascimento, M., Rosado, R., Sant Anna, I. A novel approach to determine tropical persistence on alfalfa germplasm. Agronomy Journal, 2022. pdf

  2. Ferreira, F., Leite, R., Malikouski, R., Peixoto, Marco Antônio, Bernardeli, A., Alves, R., Machado, J. Bioenergy elephant grass genotype selection leveraged by spatial modeling of conventional and high-throughput phenotyping data. Journal of Cleaner Production, 363, 132286, 2022. pdf

  3. Malikouski, R., Nascimento, E., Morais, A., Peixoto, Marco Antônio, Zucoloto, M., Barbosa, D., Bhering, L. Interrelations between productive, vegetative, and fruit quality traits in Tahiti acid lime through Bayesian inference. Ciência Rural, v. 52, p. E20210007, 2022. pdf

  4. Coelho, I., Malikouski, R., Evangelista, J., Peixoto, Marco Antônio, Alves, R., Pinto, J., Reis, E., Bhering, L. Genetic variability analyses considering multi-environment trials in maize breeding. Euphytica, v. 218, p. 13, 2022. pdf

  5. Peixoto, Marco Antônio, Malikouski, R., Nascimento, E., Schuster, A., Farias, F., Carvalho, L., Teodoro, P., Bhering, L. Genotype plus genotype by-environment interaction biplot and genetic diversity analyses on multi-environment trials data of yield and technological traits of cotton cultivars. Ciência Rural, v. 52, p. E20201054, 2022. pdf

  6. Marinho, C., Coelho, I., Peixoto, Marco Antônio, Junior, G., Resende, M. Genomic Selection As a Tool for Maize Cultivars Development. Revista Brasileira de Milho e Sorgo, v. 21, 2022. pdf

  7. Evangelista, J., Peixoto, Marco Antônio, Coelho, I., Alves, R., Resende, M., Silva, F., Laviola, B., Bhering, L. Genetic evaluation and selection in Jatropha curcas through Frequentist and Bayesian inferences. Bragantia, 81, 2022. pdf

  8. Silva-Junior, A., Sant’Anna, I., Peixoto, Marco Antônio, Torres, L., Siqueira, M., Costa, W., Azevedo, C., Soares, P., Cruz, C. Multiple-trait model through Bayesian inference applied to flood-irrigated rice (Oryza sativa L). Euphytica, 218(9), 1-12, 2022. pdf

  9. Malikouski, R., Alves, R., Peixoto, Marco Antônio, Ferreira, F., Nascimento, E., Morais, A., Zucoloto, M., Dias, K., Bhering, L. Selection index based on random regression model in ‘Tahiti’acid lime. Euphytica. 218(11):153. pdf

2021

  1. Malikouski, R., Peixoto, Marco Antônio, Morais, A., Elizeu, A., Carvalho, J., Zucoloto, M., Resende, M., Bhering, L. Repeatability coefficient estimates and optimum number of harvests in graft/rootstock combinations for ‘tahiti’ acid lime. Acta Scientiarum-Agronomy, v. 43, p. E51740, 2021. pdf

  2. Peixoto, Marco Antônio; Evangelista, J., Coelho, I., Carvalho, L., Farias, F., Teodoro, P., Bhering, L. Genotype selection based on multiple traits in cotton crops: the application of genotype by yield-trait biplot. Acta Scientiarum-Agronomy, v. 44, p. E54136, 2021. pdf

  3. Evangelista, J., Alves, R., Peixoto, Marco Antônio, Resende, M., Teodoro, P., Silva, F., Bhering, L. Soybean productivity, stability, and adaptability through mixed model methodology. Ciência Rural, v. 51, p. E20200406, 2021. pdf

  4. Peixoto, Marco Antônio, Evangelista, J., Alves, R., Farias, F., Carvalho, L., Teodoro, L., Teodoro, P., Bhering, L. Models for optimizing selection based on adaptability and stability of cotton genotypes. Ciência Rural, v. 51, p. E20200530, 2021. pdf

  5. Leite, K., Peixoto, Marco Antônio, Barreto, C., Feio, R., Dergam, J. Cytogenetics of Four Species of the Green Clade Aplastodiscus Lutz, 1950 (Anura: Cophomantinae): New Insights into the Chromosomal Evolution of the Genus. Cytogenetic And Genome Research, v. 1, p. 1-7, 2021. pdf

  6. Peixoto, Marco Antônio, Evangelista, J., Coelho, I., Alves, R., Laviola, B., Silva, F., Resende, M., Bhering, L. Multiple-trait model through Bayesian inference applied to Jatropha curcas breeding for bioenergy. Plos One, v. 16, p. E0247775, 2021. Script available here. pdf

  7. Evangelista, J., Peixoto, Marco Antônio, Coelho, I., Alves, R., Silva, F., Resende, M., Silva, F., Bhering, L. Environmental stratification and genotype recommendation toward the soybean ideotype: a Bayesian approach. Crop Breeding and Applied Biotechnology, v. 21, p. E359721111, 2021. pdf

  8. Silva, L., Peixoto, Marco Antônio, Peixoto, L., Romero, J., Bhering, L. Multi-trait genomic selection indexes applied to identification of superior genotypes. BRAGANTIA, v. 80, p. E3621, 2021. pdf

  9. Peixoto, Marco Antônio, Coelho, I., Evangelista, J., Santos, S., Alves, R., Pinto, J., Reis, E., Bhering, L. Selection of maize hybrids: an approach with multi-trait, multi-environment, and ideotype-design. Crop Breeding and Applied Biotechnology, v. 21, p. E34582122, 2021. pdf

  10. Assis, C., Lacerda, J., Guimarães, C., Peixoto, Marco Antônio, Luna, M., Feio, R. A new species of Thoropa Cope, 1865 (Anura, Cycloramphidae) from the Serra da Mantiqueira, Southeast Brazil. Zootaxa, v. 4995, p. 505-522, 2021. pdf

  11. Peixoto, Marco Antônio, Malikouski, R., Evangelista, J., Alves, R., Morais, A., Barbosa, D., Zucoloto, M., Bhering, L. Multitrait and multiharvest analyses for genetic assessment and selection of Tahiti acid lime genotypes through Bayesian inference. Scientia Horticulturae, v. 290, p. 110536, 2021. Script available here. pdf

  12. Coelho, I., Peixoto, Marco Antônio, Marçal, T., Bernardeli, A., Alves, R., Lima, R., Reis, E., Bhering, L. Accounting for spatial trends in multi-environment diallel analysis in maize breeding. Plos One, v. 16, p. E0258473, 2021. pdf

  13. Ferreira, F., Rocha, J., Alves, R., Malikouski, R., Peixoto, Marco Antônio, Oliveira, S., Aguiar, A., Bhering, L. GGE biplot-based genetic selection to guide interspecific crossing in Corymbia spp. Bragantia, v. 80, p. E5221, 2021. pdf

  14. Barreto, C., Peixoto, Marco Antônio, Souza, K., Travenzoli, N., Feio, R., Dergam, J. Further insights into chromosomal evolution of the genus Enyalius with karyotype description of Enyalius boulengeri Etheridge, 1969 (Squamata, Leiosauridae). Caryologia, v. 74, p. 169-175, 2021. pdf

2020

  1. Peixoto, Marco Antônio; Guedes, T., Silva, E., Feio, R., Romano, P., Biogeographic tools help to assess the effectiveness of protected areas for the conservation of anurans in the Mantiqueira mountain range, Southeastern Brazil. Journal for Nature Conservation, v. 54, p. 125799, 2020. pdf

  2. Alves, R., Resende, M., Rocha, J., Peixoto, Marco Antônio, Teodoro, P., Silva, F., Bhering, L., Santos, G. Quantifying individual variation in reaction norms using random regression models fitted through Legendre polynomials: application in eucalyptus breeding. Bragantia, v. 79, p. 1-11, 2020. pdf

  3. Coelho, I., Alves, R., Rocha, J., Peixoto, Marco Antônio, Teodoro, L., Teodoro, P., Pinto, J., Reis, E., Bhering, L. Multi-trait multi-environment diallel analyses for maize breeding. Euphytica, v. 216, p. 1-17, 2020. pdf

  4. Peixoto, Marco Antônio, Coelho, I., Evangelista, J., Alves, R., Rocha, J., Farias, F., Carvalho, L., Teodoro, P., Bhering, L. Reaction Norms-Based Approach Applied To Optimizing Recommendations of Cotton Genotypes. Agronomy Journal, V. 1, P. 1-11, 2020. pdf

  5. Coelho, I., Peixoto, Marco Antônio, Evangelista, J., Alves, R., Sales, S., Resende, M., Pinto, J., Reis, E., Bhering, L. Multiple-trait, random regression, and compound symmetry models for analyzing multi-environment trials in maize breeding. Plos One, v. 15, p. E0242705, 2020. pdf

  6. Peixoto, Marco Antônio, Alves, R., Coelho, I., Evangelista, J., Resende, M., Carvalho, J., Silva, F., Laviola, B., Bhering, L. Random regression for modeling yield genetic trajectories in Jatropha curcas breeding. Plos One, v. 15, p. E0244021, 2020. pdf

2018

  1. Silva, E., Peixoto, Marco Antônio, Leite, F., Feio, R., Garcia, P. Anuran Distribution in a Highly Diverse Region of the Atlantic Forest: The Mantiqueira Mountain Range in Southeastern Brazil. Herpetologica, v. 74, p. 294-305, 2018. pdf

  2. Moura, M., Costa, H., Peixoto, Marco Antônio, Carvalho, A., Santana, D., Vasconcelos, H. Geographical and socioeconomic determinants of species discovery trends in a biodiversity hotspot. Biological Conservation, v. 220, p. 237-244, 2018. pdf

2017 and previous

  1. Peixoto, Marco Antônio, Oliveira, M., Feio, R., Dergam, J. Karyological study of Ololygon tripui (Lourenço, Nascimento and Pires, 2009), (Anura, Hylidae) with comments on chromosomal traits among populations. Comparative Cytogenetics, v. 10, p. 505-516, 2016. pdf

  2. Peixoto, Marco Antônio, Guimarães, C., Silva, D., Feio, R. The occurrence of Fritziana Mello-Leitão, 1973 (Anura, Hemiphractidae) im Minas Gerais state, southeastern Brazil: new records and distribution of the genus. Check List, v. 12, p. 1-5, 2016. pdf

  3. Peixoto, Marco Antônio; Lacerda, J., Coelho-Augusto, C., Feio, R., Dergam, J. The karyotypes of five species of the Scinax perpusillus group (Amphibia, Anura, Hylidae) of southeastern Brazil show high levels of chromosomal stabilization in this taxon. Genetica, v. 143, p. 729-739, 2015. pdf